sbol3.localsub

Module Contents

Classes

LocalSubComponent

LocalSubComponent serves as a way to create a placeholder in more

Functions

build_local_subcomponent(→ sbol3.SBOLObject)

class LocalSubComponent(types: sbol3.typing.Union[str, list[str]], *, locations: sbol3.typing.Union[sbol3.Location, sbol3.typing.List[sbol3.Location]] = None, roles: sbol3.typing.List[str] = None, orientation: str = None, name: str = None, description: str = None, derived_from: sbol3.typing.List[str] = None, generated_by: sbol3.typing.List[str] = None, measures: sbol3.typing.List[sbol3.SBOLObject] = None, identity: str = None, type_uri: str = SBOL_LOCAL_SUBCOMPONENT)

Bases: sbol3.feature.Feature

LocalSubComponent serves as a way to create a placeholder in more complex Components, such as a variable to be filled in later or a composite that exists only within the context of the parent Component.

Parameters

  • identity – this object’s Uniform Resource Identifier (URI). this URI MUST be globally unique among all other Identified object URIs. See SBOL 3.0.1 specification section 5.1. This can also be a displayId, which will be concatenated to a default namespace automatically.

  • type_uri – the concrete type of this object, specified as a URI. These are typically in the SBOL3 namespace, like http://sbols.org/v3#Sequence or http://sbols.org/v3#Component. This can also be the type URI of an extension class.

  • name – A human-readable name for this object, for display purposes.

  • description – Per the SBOL 3.0.1 specification, “a more thorough text description” of this object.

  • derived_from – The URIs of one or more SBOL or non-SBOL objects from which this object was derived. This property is defined by the PROV-O ontology.

  • generated_by – The URIs of one or more prov:Activity objects that describe how this object was generated. This property is defined by the PROV-O ontology.

  • measures – The URIs of one or more om:Measure objects, each of which refers to a om:Measure object that describes measured parameters for this object. om:Measure objects are defined by the OM ontology

accept(visitor: Any) → Any

Invokes visit_local_sub_component on visitor with self as the only argument.

Parameters

visitor (Any) – The visitor instance

Raises

AttributeError – If visitor lacks a visit_local_sub_component method

Returns

Whatever visitor.visit_local_sub_component returns

Return type

Any

build_local_subcomponent(identity: str, *, type_uri: str = SBOL_LOCAL_SUBCOMPONENT) → sbol3.SBOLObject